package phylogenetics

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Parameters
Signature

phylogenetics
- Library phylogenetics
  - Phylogenetics
    
    Alignment
    
    Make
    
    Alphabet
    
    S
    
    Table
    
    Vector
    
    Matrix
    
    S_int
    
    Table
    
    Vector
    
    Matrix
    
    Make
    
    Table
    
    Vector
    
    Matrix
    
    Amino_acid
    
    Table
    
    Vector
    
    Matrix
    
    Birth_death
    
    Bppsuite
    
    Cmd
    
    Codon
    
    S
    
    Table
    
    Vector
    
    Matrix
    
    Genetic_code
    
    NS
    
    Table
    
    Vector
    
    Matrix
    
    Table
    
    Vector
    
    Matrix
    
    Universal_genetic_code
    
    NS
    
    Table
    
    Vector
    
    Matrix
    
    Discrete_pd
    
    Dna
    
    Felsenstein
    
    Alignment
    
    Make
    
    Fitch
    
    ID_monad
    
    Iupac_nucleotide
    
    Table
    
    Vector
    
    Matrix
    
    Linear_algebra
    
    Vector
    
    Matrix
    
    S
    
    Vector
    
    Matrix
    
    Vector
    
    Matrix
    
    Linear_algebra_tools
    
    Lacaml
    
    Vec
    
    Mat
    
    List1
    
    MCMC
    
    M
    
    Alignment
    
    Felsenstein
    
    Mutsel
    
    NSCodon
    
    NSCodon_rate_matrix
    
    Nelder_mead
    
    Newick
    
    Newick_ast
    
    Newick_lexer
    
    Newick_parser
    
    MenhirInterpreter
    
    Incremental
    
    Newick_parser_errors
    
    Nucleotide
    
    Table
    
    Vector
    
    Matrix
    
    Nucleotide_process
    
    Random
    
    Phylip
    
    Phylo_ctmc
    
    Phylogenetic_tree
    
    Rate_matrix
    
    S
    
    Make
    
    Nucleotide
    
    Amino_acid
    
    Rejection_sampling
    
    Make
    
    Seq
    
    Base
    
    S
    
    Make
    
    Make_list
    
    DNA
    
    Sequence_generation
    
    Base
    
    Sequence
    
    Make
    
    Sequence_simulator
    
    Alphabet
    
    Make
    
    Sigs
    
    BASE
    
    SEQUENCE
    
    ALIGNMENT
    
    EVOL_MODEL
    
    Simulator
    
    Branch_info
    
    Make
    
    NSCodon
    
    Site_evolution_model
    
    S
    
    S_with_reduction
    
    Rate_matrix
    
    Diagonalizable_rate_matrix
    
    Make
    
    Make_diag
    
    Nucleotide_S_with_reduction
    
    JC69
    
    JC69_numerical
    
    K80
    
    K80_numerical
    
    Stat_tools
    
    TKF91
    
    Make_simulator
    
    Tree
    
    Utils
    
    Wag
    
    Zipper
- Sources
  - phylogenetics
    
    ID_monad.ml
    
    TKF91.ml
    
    alignment.ml
    
    alphabet.ml
    
    amino_acid.ml
    
    birth_death.ml
    
    bppsuite.ml
    
    codon.ml
    
    discrete_pd.ml
    
    dna.ml
    
    felsenstein.ml
    
    fitch.ml
    
    iupac_nucleotide.ml
    
    linear_algebra.ml
    
    linear_algebra_tools.ml
    
    list1.ml
    
    mCMC.ml
    
    mutsel.ml
    
    nelder_mead.ml
    
    newick.ml
    
    newick_ast.ml
    
    newick_lexer.ml
    
    newick_parser.ml
    
    newick_parser_errors.ml
    
    nucleotide.ml
    
    nucleotide_process.ml
    
    phylip.ml
    
    phylo_ctmc.ml
    
    phylogenetic_tree.ml
    
    phylogenetics.ml
    
    rate_matrix.ml
    
    rejection_sampling.ml
    
    seq.ml
    
    sequence_generation.ml
    
    sequence_simulator.ml
    
    sigs.ml
    
    simulator.ml
    
    site_evolution_model.ml
    
    stat_tools.ml
    
    tree.ml
    
    utils.ml
    
    wag.ml
    
    zipper.ml

Legend:
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Library
Module
Module type
Parameter
Class
Class type
Source

Module `Rejection_sampling.Make`Source

Parameters

module Align : Sigs.ALIGNMENT

Signature

Source

val generate_trees : 
  sampler:(unit -> Phylogenetic_tree.t) ->
  int ->
  Phylogenetic_tree.t list

Source

val reject : 
  ('a -> 'b -> int -> Align.t) ->
  'a ->
  Align.t ->
  'b list ->
  'b list

Sourceval mean_floats : float list -> float

Sourceval get_branch : int -> Phylogenetic_tree.t list -> float list

Sourceval mean_specific_branch : int -> Phylogenetic_tree.t list -> float

package phylogenetics

Module Rejection_sampling.MakeSource

Parameters

Signature

Module `Rejection_sampling.Make`Source