package bistro

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package bistro

bistro
- Library bistro
  - Bistro
    
    regular_file_t
    
    directory_t
    
    Template_dsl
    
    Shell_dsl
    
    Workflow
    
    text
    
    sexp_value
    
    binary_file
    
    pdf
    
    html
    
    png
    
    svg
    
    tsv
    
    csv
    
    zip
    
    gz
    
    bz2
    
    tar
    
    Private
- Library bistro.engine
  - Bistro_engine
    
    Allocator
    
    Db
    
    Docker
    
    Eval_thread
    
    Infix
    
    Execution_env
    
    Execution_trace
    
    Outcome
    
    Run_details
    
    Set
    
    Local_backend
    
    Logger
    
    t
    
    Lwt_queue
    
    Misc
    
    Path
    
    Scheduler
    
    Gc
    
    Backend
    
    Make
    
    Shell_command
    
    Singularity
- Library bistro.internals
  - Bistro_internals
    
    Command
    
    Template
    
    Workflow
    
    Docker_image
    
    Singularity_image
    
    Any
    
    T
    
    Set
    
    Table
    
    Map
- Library bistro.multinode
  - Bistro_multinode
    
    Client
    
    Server
- Library bistro.nlp
  - Bistro_nlp
    
    Stanford_parser
    
    deps
- Library bistro.script
  - Bistro_script
    
    B
    
    Located
    
    Position
    
    ast_loc_transform
    
    ast_translation
- Library bistro.unix
  - Bistro_unix
    
    Cmd
- Library bistro.utils
  - Bistro_utils
    
    Console_logger
    
    Dot_output
    
    Html_logger
    
    R_script
    
    Repo
    
    Report
    
    Md
    
    Toplevel_eval
    
    Make
- Library ppx_bistro
  - Ppx_bistro
    
    L
    
    B
    
    Located
    
    payload_rewriter
- Sources
  - bistro
    
    bistro.ml
  - bistro.engine
    
    allocator.ml
    
    bistro_engine.ml
    
    db.ml
    
    docker.ml
    
    eval_thread.ml
    
    execution_env.ml
    
    execution_trace.ml
    
    local_backend.ml
    
    logger.ml
    
    lwt_queue.ml
    
    misc.ml
    
    path.ml
    
    scheduler.ml
    
    shell_command.ml
    
    singularity.ml
  - bistro.internals
    
    bistro_internals.ml
    
    command.ml
    
    template.ml
    
    workflow.ml
  - bistro.multinode
    
    bistro_multinode.ml
  - bistro.nlp
    
    bistro_nlp.ml
  - bistro.script
    
    bistro_script.ml
  - bistro.unix
    
    bistro_unix.ml
  - bistro.utils
    
    bistro_utils.ml
    
    console_logger.ml
    
    dot_output.ml
    
    html_logger.ml
    
    r_script.ml
    
    repo.ml
    
    report.ml
    
    toplevel_eval.ml
  - ppx_bistro
    
    ppx_bistro.ml

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Module `Bistro_engine`Source

Sourcemodule Allocator : sig ... end

Sourcemodule Db : sig ... end

A database to cache workflow result and execution traces

Sourcemodule Docker : sig ... end

Sourcemodule Eval_thread : sig ... end

Lwt threads that accumulate errors

Sourcemodule Execution_env : sig ... end

Sourcemodule Execution_trace : sig ... end

Sourcemodule Local_backend : sig ... end

Sourcemodule Logger : sig ... end

Sourcemodule Lwt_queue : sig ... end

Sourcemodule Misc : sig ... end

Sourcemodule Path : sig ... end

Helper functions to represent paths as string lists. For absolute paths, the first element of the list is "/".

Sourcemodule Scheduler : sig ... end

Sourcemodule Shell_command : sig ... end

Sourcemodule Singularity : sig ... end

package bistro

Module Bistro_engineSource

Module `Bistro_engine`Source