package bistro

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package bistro

bistro
- Library bistro
  - Bistro
    
    regular_file_t
    
    directory_t
    
    Template_dsl
    
    Shell_dsl
    
    Workflow
    
    text
    
    sexp_value
    
    binary_file
    
    pdf
    
    html
    
    png
    
    svg
    
    tsv
    
    csv
    
    zip
    
    gz
    
    bz2
    
    tar
    
    Private
- Library bistro.engine
  - Bistro_engine
    
    Allocator
    
    Db
    
    Docker
    
    Eval_thread
    
    Infix
    
    Execution_env
    
    Execution_trace
    
    Outcome
    
    Run_details
    
    Set
    
    Local_backend
    
    Logger
    
    t
    
    Lwt_queue
    
    Misc
    
    Path
    
    Scheduler
    
    Gc
    
    Backend
    
    Make
    
    Shell_command
    
    Singularity
- Library bistro.internals
  - Bistro_internals
    
    Command
    
    Template
    
    Workflow
    
    Docker_image
    
    Singularity_image
    
    Any
    
    T
    
    Set
    
    Table
    
    Map
- Library bistro.multinode
  - Bistro_multinode
    
    Client
    
    Server
- Library bistro.nlp
  - Bistro_nlp
    
    Stanford_parser
    
    deps
- Library bistro.script
  - Bistro_script
    
    B
    
    Located
    
    Position
    
    ast_loc_transform
    
    ast_translation
- Library bistro.unix
  - Bistro_unix
    
    Cmd
- Library bistro.utils
  - Bistro_utils
    
    Console_logger
    
    Dot_output
    
    Html_logger
    
    R_script
    
    Repo
    
    Report
    
    Md
    
    Toplevel_eval
    
    Make
- Library ppx_bistro
  - Ppx_bistro
    
    L
    
    B
    
    Located
    
    payload_rewriter
- Sources
  - bistro
    
    bistro.ml
  - bistro.engine
    
    allocator.ml
    
    bistro_engine.ml
    
    db.ml
    
    docker.ml
    
    eval_thread.ml
    
    execution_env.ml
    
    execution_trace.ml
    
    local_backend.ml
    
    logger.ml
    
    lwt_queue.ml
    
    misc.ml
    
    path.ml
    
    scheduler.ml
    
    shell_command.ml
    
    singularity.ml
  - bistro.internals
    
    bistro_internals.ml
    
    command.ml
    
    template.ml
    
    workflow.ml
  - bistro.multinode
    
    bistro_multinode.ml
  - bistro.nlp
    
    bistro_nlp.ml
  - bistro.script
    
    bistro_script.ml
  - bistro.unix
    
    bistro_unix.ml
  - bistro.utils
    
    bistro_utils.ml
    
    console_logger.ml
    
    dot_output.ml
    
    html_logger.ml
    
    r_script.ml
    
    repo.ml
    
    report.ml
    
    toplevel_eval.ml
  - ppx_bistro
    
    ppx_bistro.ml

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Module `Bistro_engine.Shell_command`Source

Sourcetype file_dump =

| File_dump of {
1. text : string;
2. path : string;
}

Sourcetype t

Source

val make : 
  Execution_env.t ->
  Bistro_internals.Workflow.container_image list ->
  Execution_env.insert Bistro_internals.Command.t ->
  t

Sourceval text : t -> string

Sourceval file_dumps : t -> file_dump list

Sourceval run : t -> (int * bool) Lwt.t

Source

val container : 
  t ->
  [ `Docker_container of Bistro_internals.Workflow.Docker_image.t
  | `Singularity_container of Bistro_internals.Workflow.container_image ]
    option

package bistro

Module Bistro_engine.Shell_commandSource

Module `Bistro_engine.Shell_command`Source