package kappa-library
Public internals of the Kappa tool suite. Use this package to use kappa as a lib
Install
Dune Dependency
Authors
Maintainers
Sources
v4.1.3.tar.gz
md5=1c9a8a0d79f085757817f90834e166f5
sha512=13ac40442940ba6e72d7dc5bf952e67443872f7bff63e9c76a3a699a6904c88696047fe04519b7ec6546371642f6ee7b0983117be302694aca15500b0df40de3
doc/src/kappa-library.terms/matching.ml.html
Source file matching.ml
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309
(******************************************************************************) (* _ __ * The Kappa Language *) (* | |/ / * Copyright 2010-2020 CNRS - Harvard Medical School - INRIA - IRIF *) (* | ' / *********************************************************************) (* | . \ * This file is distributed under the terms of the *) (* |_|\_\ * GNU Lesser General Public License Version 3 *) (******************************************************************************) type t = Renaming.t Mods.IntMap.t * Mods.IntSet.t (* (map,set) map: point_i -> (node_j(i) -> id_node_graph_in_current_matching) set:codomain of current matching *) type matching = t let empty = Mods.IntMap.empty, Mods.IntSet.empty let add_cc (inj, co) id r = let c = Renaming.image r in match Mods.IntSet.disjoint_union co c with | Some co' -> Some (Mods.IntMap.add id r inj, co') | None -> None let debug_print f (m, _co) = Format.fprintf f "@[(%a)@]" (Pp.set Mods.IntMap.bindings Pp.comma (fun f (ccid, nm) -> Pp.set Renaming.to_list Pp.comma (fun f (node, dst) -> Format.fprintf f "%i:%i->%i" ccid node dst) f nm)) m let reconstruct_renaming ~debug_mode domain graph cc_id root = let point = Pattern.Env.get domain cc_id in match Pattern.Env.roots point with | None -> failwith "Matching.reconstruct cc error" (*- rm - add : int -> int -> Renaming.t -> Renaming.t *) | Some (rids, rty) -> let inj = Renaming.empty () in let _, injective = match Pattern.reconstruction_navigation (Pattern.Env.content point) with | _ :: _ as -> List.fold_left (fun (root, injective) -> ( None, injective && Navigation.imperative_edge_is_valid ~debug_mode ?root inj graph nav )) (Some (root, rty), true) nav (*- rm - find_root: cc -> (type, node) option *) | [] -> ( None, (match rids with | [ rid ] -> Renaming.imperative_add ~debug_mode rid root inj | _ -> false) ) in if injective then inj else failwith ("Matching.reconstruct renaming error at root " ^ string_of_int root) (* reconstruct: Pattern.Env.t -> Edges.t -> t -> int -> Pattern.id -> int -> t option*) let reconstruct ~debug_mode domain graph inj id cc_id root = let rename = reconstruct_renaming ~debug_mode domain graph cc_id root in match Mods.IntSet.disjoint_union (Renaming.image rename) (snd inj) with | None -> None | Some co -> Some (Mods.IntMap.add id rename (fst inj), co) let rec aux_is_root_of ~debug_mode graph root inj = function | [] -> true | h :: t -> Navigation.imperative_edge_is_valid ~debug_mode ?root inj graph h && aux_is_root_of ~debug_mode graph None inj t let is_root_of ~debug_mode domain graph ((_, rty) as root) cc_id = let point = Pattern.Env.get domain cc_id in match Pattern.reconstruction_navigation (Pattern.Env.content point) with | [] -> (match Pattern.Env.roots point with | Some (_, rty') -> rty = rty' | None -> false) | -> aux_is_root_of ~debug_mode graph (Some root) (Renaming.empty ()) nav let roots_of ~debug_mode domain graph cc = Edges.all_agents_where (fun x -> is_root_of ~debug_mode domain graph x cc) graph (* get : (ContentAgent.t * int) -> t -> int *) let get ~debug_mode ((node, _), id) (t, _) = Renaming.apply ~debug_mode (Mods.IntMap.find_default Renaming.dummy id t) node let elements_with_types domain ccs (t, _) = let out = Array.make (Mods.IntMap.size t) [] in let () = Mods.IntMap.iter (fun id map -> out.(id) <- Renaming.fold (fun i out acc -> ( out, Pattern.find_ty (Pattern.Env.content (Pattern.Env.get domain ccs.(id))) i ) :: acc) map []) t in out module Cache = struct type t = Pattern.id * (int * int) option let compare (a, a') (b, b') = let c = Pattern.compare_canonicals a b in if c = 0 then ( match a', b' with | None, None -> 0 | None, Some _ -> 1 | Some _, None -> -1 | Some x, Some y -> Mods.int_pair_compare x y ) else c let print f (a, a') = Format.fprintf f "%a%a" (Pattern.print ~noCounters:true ?domain:None ~with_id:true) a (Pp.option (Pp.pair Format.pp_print_int Format.pp_print_int)) a' end module CacheSetMap = SetMap.Make (Cache) type cache = CacheSetMap.Set.t let empty_cache = CacheSetMap.Set.empty let ~debug_mode inj graph = List.fold_left (fun inj step -> match inj with | None -> inj | Some inj -> Navigation.injection_for_one_more_edge ~debug_mode inj graph step) (Some inj) (*edges: list of concrete edges, returns the roots of observables that are above in the domain*) let from_edge ~debug_mode domain graph ((out, cache) as acc) node site arrow = let rec aux_from_edges cache ((obs, rev_deps) as acc) = function | [] -> acc, cache | (pid, point, inj_point2graph) :: remains -> let acc' = match Pattern.Env.roots point with | None -> acc | Some (ids, ty) -> ( List.fold_left (fun acc id -> (pid, (Renaming.apply ~debug_mode inj_point2graph id, ty)) :: acc) obs ids, Operator.DepSet.union rev_deps (Pattern.Env.deps point) ) in let remains', cache' = List.fold_left (fun ((re, ca) as pair) son -> match survive_nav ~debug_mode inj_point2graph graph son.Pattern.Env.next with | None -> pair | Some inj' -> let rename = Renaming.compose ~debug_mode false son.Pattern.Env.inj inj' in let ca' = CacheSetMap.Set.add (son.Pattern.Env.dst, Renaming.min_elt rename) ca in if ca == ca' then pair else ( let p' = Pattern.Env.get domain son.Pattern.Env.dst in let next = son.Pattern.Env.dst, p', rename in next :: re, ca' )) (remains, cache) (Pattern.Env.sons point) in aux_from_edges cache' acc' remains' in match Pattern.Env.get_elementary ~debug_mode domain node site arrow with | None -> acc | Some x -> aux_from_edges (*(*unnecessary*)CacheSetMap.Set.add (cc_id,Renaming.min_elt inj')*) cache out [ x ] let observables_from_agent domain graph (((obs, rdeps), cache) as acc) ((_, ty) as node) = if Edges.is_agent node graph then ( match Pattern.Env.get_single_agent ty domain with | Some (cc, deps) -> ((cc, node) :: obs, Operator.DepSet.union rdeps deps), cache | None -> acc ) else acc let observables_from_free ~debug_mode domain graph acc node site = from_edge ~debug_mode domain graph acc node site Navigation.ToNothing let observables_from_internal ~debug_mode domain graph acc node site id = from_edge ~debug_mode domain graph acc node site (Navigation.ToInternal id) let observables_from_link ~debug_mode domain graph acc n site n' site' = from_edge domain ~debug_mode graph acc n site (Navigation.ToNode (Navigation.Fresh n', site')) module Agent = struct type t = Existing of Agent.t * int | Fresh of int * int (* type, id *) let rename ~debug_mode id inj = function | Existing (n, id') as x -> if id <> id' then x else ( let n' = Agent.rename ~debug_mode inj n in if n == n' then x else Existing (n', id') ) | Fresh _ as x -> x let print ?sigs f = function | Existing (n, id) -> Format.fprintf f "%a/*%i*/" (Agent.print ?sigs ~with_id:true) n id | Fresh (ty, i) -> Format.fprintf f "%a/*%t %i*/" (match sigs with | None -> Format.pp_print_int | Some sigs -> Signature.print_agent sigs) ty Pp.nu i let print_site ?sigs place f site = match place with | Existing (n, _) -> Agent.print_site ?sigs n f site | Fresh (ty, _) -> (match sigs with | None -> Format.pp_print_int f site | Some sigs -> Signature.print_site sigs ty f site) let print_internal ?sigs place site f id = match place with | Existing (n, _) -> Agent.print_internal ?sigs n site f id | Fresh (ty, _) -> (match sigs with | None -> Format.fprintf f "%i~%i" site id | Some sigs -> Signature.print_site_internal_state sigs ty site f (Some id)) let get_type = function | Existing (n, _) -> Agent.sort n | Fresh (i, _) -> i let get_id = function | Existing (n, _) -> Agent.id n | Fresh (_, i) -> i let is_fresh = function | Existing _ -> false | Fresh _ -> true let concretize ~debug_mode (inj_nodes, inj_fresh) = function | Existing (n, id) -> get ~debug_mode (n, id) inj_nodes, Agent.sort n | Fresh (ty, id) -> (match Mods.IntMap.find_option id inj_fresh with | Some x -> x, ty | None -> raise Not_found) let to_yojson = function | Existing (n, ty) -> (`Assoc [ ( "Existing", `List [ `Assoc [ "agent", Agent.to_json n ]; `Assoc [ "type", `Int ty ]; ] ); ] : Yojson.Basic.t) | Fresh (id, ty) -> `Assoc [ "Fresh", `Assoc [ "id", `Int id; "type", `Int ty ] ] let of_yojson = function | `Assoc [ ("Existing", `List list) ] -> (match list with | [ `Assoc [ ("agent", a) ]; `Assoc [ ("type", `Int ty) ] ] -> Existing (Agent.of_json a, ty) | x :: _ -> raise (Yojson.Basic.Util.Type_error ("Invalid agent", x)) | [] -> raise (Yojson.Basic.Util.Type_error ("Invalid agent", `Null))) | `Assoc [ ("Fresh", a) ] -> (match a with | `Assoc [ ("id", `Int id); ("type", `Int ty) ] -> Fresh (id, ty) | x -> raise (Yojson.Basic.Util.Type_error ("Invalid agent", x))) | x -> raise (Yojson.Basic.Util.Type_error ("Invalid agent", x)) end
sectionYPositions = computeSectionYPositions($el), 10)"
x-init="setTimeout(() => sectionYPositions = computeSectionYPositions($el), 10)"
>