package kappa-library
Public internals of the Kappa tool suite. Use this package to use kappa as a lib
Install
Dune Dependency
Authors
Maintainers
Sources
v4.1.3.tar.gz
md5=1c9a8a0d79f085757817f90834e166f5
sha512=13ac40442940ba6e72d7dc5bf952e67443872f7bff63e9c76a3a699a6904c88696047fe04519b7ec6546371642f6ee7b0983117be302694aca15500b0df40de3
doc/src/kappa-library.mixtures/signature.ml.html
Source file signature.ml
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(******************************************************************************) (* _ __ * The Kappa Language *) (* | |/ / * Copyright 2010-2020 CNRS - Harvard Medical School - INRIA - IRIF *) (* | ' / *********************************************************************) (* | . \ * This file is distributed under the terms of the *) (* |_|\_\ * GNU Lesser General Public License Version 3 *) (******************************************************************************) type counter_info = { counter_info_min: int option; counter_info_max: int option; counter_default_value: int; } type 'links site_sig = { internal_state: unit NamedDecls.t; links: 'links option; counter_info: counter_info option; } type t = bool array array site_sig NamedDecls.t let fold f = NamedDecls.fold (fun i n o _ -> f i n o) let num_of_site ?agent_name site_name signature = let kind = match agent_name with | None -> "site name" | Some agent_name -> "site name for agent " ^ agent_name in NamedDecls.elt_id ~kind signature site_name let site_of_num addr signature = try NamedDecls.elt_name signature addr with Invalid_argument _ -> raise Not_found let num_of_internal_state site_id state signature = try let site_name, site_sig = signature.NamedDecls.decls.(site_id) in NamedDecls.elt_id ~kind:("internal state for site " ^ site_name) site_sig.internal_state state with Invalid_argument _ -> raise Not_found let internal_state_of_site_id site_id val_id signature = try let site_sig = NamedDecls.elt_val signature site_id in NamedDecls.elt_name site_sig.internal_state val_id with Invalid_argument _ -> raise Not_found let counter_of_site_id site_id signature = try (NamedDecls.elt_val signature site_id).counter_info with Invalid_argument _ -> raise Not_found let has_counter signature = fold (fun p_id _ ok -> try let site_sig = NamedDecls.elt_val signature p_id in ok || not (site_sig.counter_info = None) with Invalid_argument _ -> raise Not_found) false signature (* let read_position p lb = match Yojson.Basic.from_lexbuf ~stream:true p lb with | `Assoc [ ("line", `Int line); ("chr", `Int chr) ] | `Assoc [ ("chr", `Int chr); ("line", `Int line) ] -> { line; chr } | x -> raise (Yojson.Basic.Util.Type_error ("Invalid position", x)) let write_position ob { line; chr } = Yojson.write_assoc ob [ "line", `Int line; "chr", `Int chr ] *) let one_to_json = NamedDecls.to_json (fun signature -> `Assoc [ ( "internal_state", NamedDecls.to_json (fun () -> `Null) signature.internal_state ); ( "links", JsonUtil.of_option (fun links -> `List (Array.fold_right (fun a acc -> `List (Array.fold_right (fun b c -> `Bool b :: c) a []) :: acc) links [])) signature.links ); ( "counter_info", JsonUtil.of_option (fun c -> `Assoc [ ( "min", JsonUtil.of_option (fun x -> `Int x) c.counter_info_min ); ( "max", JsonUtil.of_option (fun x -> `Int x) c.counter_info_max ); "default", `Int c.counter_default_value; ]) signature.counter_info ); ]) let one_of_json : Yojson.Basic.t -> bool array array site_sig NamedDecls.t = NamedDecls.of_json (function | `Assoc [ ("internal_state", a); ("links", b); ("counter_info", c) ] -> { internal_state = NamedDecls.of_json (function | `Null -> () | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) a; links = Yojson.Basic.Util.to_option (function | `List l -> Tools.array_map_of_list (function | `List l' -> Tools.array_map_of_list (function | `Bool b -> b | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) l' | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) l | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) b; counter_info = Yojson.Basic.Util.to_option (function | `Assoc [ ("min", c1_opt); ("max", c2_opt); ("default", `Int c3) ] -> { counter_info_min = Yojson.Basic.Util.to_option (function | `Int c -> c | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) c1_opt; counter_info_max = Yojson.Basic.Util.to_option (function | `Int c -> c | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) c2_opt; counter_default_value = c3; } | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) c; } | x -> raise (Yojson.Basic.Util.Type_error ("Problematic agent signature", x))) type counter_agent_info = { id: int; arity: int; ports: int * int } type s = { agent_sigs: t NamedDecls.t; counter_agent_info: counter_agent_info option; } let size sigs = NamedDecls.size sigs.agent_sigs let get sigs agent_id = NamedDecls.elt_val sigs.agent_sigs agent_id let arity sigs agent_id = NamedDecls.size (get sigs agent_id) let max_arity sigs = NamedDecls.fold (fun _ _ x a -> max x (NamedDecls.size a)) 0 sigs.agent_sigs let agent_of_num i sigs = NamedDecls.elt_name sigs.agent_sigs i let num_of_agent name sigs = NamedDecls.elt_id ~kind:"agent" sigs.agent_sigs name let id_of_site ((agent_name, _) as agent_ty) site_name sigs = let n = num_of_agent agent_ty sigs in num_of_site ~agent_name site_name (get sigs n) let site_of_id agent_id site_id sigs = site_of_num site_id (get sigs agent_id) let id_of_internal_state ((agent_name, _) as agent_ty) site_name state sigs = let n = num_of_agent agent_ty sigs in let signature = get sigs n in let site_id = num_of_site ~agent_name site_name signature in num_of_internal_state site_id state signature let internal_state_of_id agent_id id_site id_state sigs = internal_state_of_site_id id_site id_state (get sigs agent_id) let internal_states_number agent_id site_id sigs = try let site_sig = NamedDecls.elt_val (get sigs agent_id) site_id in NamedDecls.size site_sig.internal_state with Invalid_argument _ -> raise Not_found let default_internal_state agent_id site_id sigs = try let site_sig = NamedDecls.elt_val (get sigs agent_id) site_id in if NamedDecls.size site_sig.internal_state = 0 then None else Some 0 with Invalid_argument _ -> invalid_arg "Signature.default_num_value: invalid site identifier" let rec allowed_link ag1 s1 ag2 s2 sigs = if ag1 > ag2 then allowed_link ag2 s2 ag1 s1 sigs else ( try match (NamedDecls.elt_val (get sigs ag1) s1).links with | None -> true | Some l -> l.(ag2 - ag1).(s2) with Invalid_argument _ -> invalid_arg "Signature.allowed_link: invalid site identifier" ) let create ~counters_per_agent agent_sigs = { agent_sigs; counter_agent_info = (if counters_per_agent = [] then None else (* If there is a counter agent, we choose 0 for its agent id and 0 and 1 as its port ids *) Some { id = 0; arity = 2; ports = 0, 1 }); } let is_counter_agent sigs agent_id = match sigs.counter_agent_info with | None -> false | Some agent_info -> agent_id = agent_info.id let ports_if_counter_agent sigs agent_id = match sigs.counter_agent_info with | None -> None | Some agent_info -> if agent_id = agent_info.id then Some agent_info.ports else None let site_is_counter sigs ag_ty id = counter_of_site_id id (get sigs ag_ty) <> None let get_counter_agent_info sigs = match sigs.counter_agent_info with | None -> failwith "No counter agent" | Some counter_agent_info -> counter_agent_info let inverted_counter_suffix : string = "__inverted" let is_inverted_counter (counter_name : string) : bool = String.ends_with ~suffix:inverted_counter_suffix counter_name let print_agent sigs f ag_ty = Format.pp_print_string f @@ agent_of_num ag_ty sigs let print_site sigs ag_ty f id = Format.pp_print_string f @@ site_of_id ag_ty id sigs let print_internal_state sigs ag_ty site f id = Format.pp_print_string f @@ internal_state_of_id ag_ty site id sigs let print_site_internal_state sigs ag_ty site f = function | None -> print_site sigs ag_ty f site | Some id -> Format.fprintf f "%s{%s}" (site_of_id ag_ty site sigs) (internal_state_of_id ag_ty site id sigs) let print_counter_info f = function | None -> () | Some c -> (match c.counter_info_min, c.counter_info_max with | Some i, Some j when i = c.counter_default_value -> Format.fprintf f "{=%d/+=%d}" i j | i_opt, j_opt -> Format.fprintf f "{-=%s/=%d/+=%s}" (match i_opt with | None -> "-oo" | Some i -> Format.sprintf "%d" i) c.counter_default_value (match j_opt with | None -> "-oo" | Some i -> Format.sprintf "%d" i)) let print_counter sigs ag_ty f id = print_counter_info f (counter_of_site_id id (get sigs ag_ty)) let print_one ?(sigs : s option) (i : int) (f : Format.formatter) (signature : t) = let pp_int f x = if NamedDecls.size x > 0 then Format.fprintf f "{%a}" (NamedDecls.print ~sep:Pp.space (fun _ na f () -> Format.fprintf f "%s" na)) x in let pp_link = match sigs with | None -> fun _ _ _ -> () | Some sigs -> fun i f -> (function | None -> () | Some links -> Format.fprintf f "[%a]" (Pp.array Pp.space (fun ag -> Pp.array Pp.space (fun si f b -> if b then Format.fprintf f "%a.%a" (print_site sigs (i + ag)) si (print_agent sigs) (i + ag)))) links) in (NamedDecls.print ~sep:(fun f -> Format.fprintf f ",@,") (fun _ name f site_sig -> Format.fprintf f "%s%a%a%a" name pp_int site_sig.internal_state (pp_link i) site_sig.links print_counter_info site_sig.counter_info)) f signature let print f sigs = Format.fprintf f "@[<v>%a@]" (NamedDecls.print ~sep:Pp.space (fun i n f si -> Format.fprintf f "@[<h>%%agent: %s(%a)@]" n (print_one ~sigs i) si)) sigs.agent_sigs let to_json sigs = NamedDecls.to_json one_to_json sigs.agent_sigs let of_json v = let agent_sigs : 'a site_sig NamedDecls.t NamedDecls.t = NamedDecls.of_json one_of_json v in match Mods.StringMap.find_option "__counter_agent" agent_sigs.NamedDecls.finder with | Some id -> let agent_signature = NamedDecls.elt_val agent_sigs id in let ports = ( num_of_site ("a", Loc.dummy) agent_signature, num_of_site ("b", Loc.dummy) agent_signature ) in { agent_sigs; counter_agent_info = Some { id; arity = 2; ports } } | None -> { agent_sigs; counter_agent_info = None }
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