Module `Bistro_internals.Workflow`Source

Sourcetype path =

| FS_path of string
| Cache_id of string
| Cd of path * string list

Sourceval cd : path -> string list -> path

Sourcemodule Docker_image : sig ... end

Sourcemodule Singularity_image : sig ... end

Sourcetype container_image =

| Docker_image of Docker_image.t
| Singularity_image of Singularity_image.t

val docker_image : 
  ?tag:string ->
  ?registry:string ->
  account:string ->
  name:string ->
  unit ->
  container_image

Sourcetype _ t =

| Pure : {
1. id : string;
2. value : 'a;
} -> 'a t
| App : {
1. id : string;
2. f : ('a -> 'b) t;
3. x : 'a t;
} -> 'b t
| Both : {
1. id : string;
2. fst : 'a t;
3. snd : 'b t;
} -> ('a * 'b) t
| List : {
1. id : string;
2. elts : 'a t list;
} -> 'a list t
| Eval_path : {
1. id : string;
2. workflow : path t;
} -> string t
| Spawn : {
1. id : string;
2. elts : 'a list t;
3. f : 'a t -> 'b t;
4. deps : any list;
} -> 'b list t
| List_nth : {
1. id : string;
2. elts : 'a list t;
3. index : int;
} -> 'a t
| Input : {
1. id : string;
2. path : string;
3. version : int option;
} -> path t
| Select : {
1. id : string;
2. dir : path t;
3. sel : string list;
} -> path t
| Plugin : ('a plugin, any) step -> 'a t
| Shell : (shell_command, any) step -> path t
| Glob : {
1. id : string;
2. pattern : string option;
3. type_selection : [ `File | `Directory ] option;
4. dir : path t;
} -> path list t
| Trywith : {
1. id : string;
2. w : 'a t;
3. failsafe : 'a t;
} -> 'a t
| Ifelse : {
1. id : string;
2. cond : bool t;
3. _then_ : 'a t;
4. _else_ : 'a t;
} -> 'a t

Sourceand ('a, 'b) step = {

id : string;
descr : string;
task : 'a;
np : int;
(*
Required number of processors
*)
mem : int t option;
(*
Required memory in MB
*)
version : int option;
(*
Version number of the wrapper
*)
deps : 'b list;

}

Sourceand 'a plugin =

| Value_plugin : (unit -> 'a) t -> 'a plugin
| Path_plugin : (string -> unit) t -> path plugin

Sourceand shell_command = {

cmd : token Command.t;
images : container_image list;

}

Sourceand token =

| Path_token of path t
| Path_list_token of {
1. elts : path list t;
2. sep : string;
3. quote : char option;
}
| String_token of string t

Sourceand any =

| Any : _ t -> any

Sourceval digest : 'a -> string

Sourceval id : 's. 's t -> string

Sourceval any : 'a t -> any

Sourceval compare_token : token -> token -> int

Sourcemodule Any : sig ... end

Sourceval input : ?version:int -> string -> path t

Sourceval select : path t -> string list -> path t

Sourceval pure : id:string -> 'a -> 'a t

Sourceval data : 'a -> 'a t

Sourceval int : 'a -> 'a t

Sourceval string : 'a -> 'a t

Sourceval app : ('a -> 'b) t -> 'a t -> 'b t

Sourceval ($) : ('a -> 'b) t -> 'a t -> 'b t

Sourceval both : 'a t -> 'b t -> ('a * 'b) t

Sourceval add_mem_dep : 'a t option -> any list -> any list

Source

val plugin : 
  ?descr:string ->
  ?np:int ->
  ?mem:int t ->
  ?version:int ->
  (unit -> 'a) t ->
  'a t

Source

val path_plugin : 
  ?descr:string ->
  ?np:int ->
  ?mem:int t ->
  ?version:int ->
  (string -> unit) t ->
  path t

Sourceval path : path t -> string t

Sourceval digestible_cmd : token Command.t -> string Command.t

Source

val shell : 
  ?descr:string ->
  ?mem:int t ->
  ?np:int ->
  ?version:int ->
  ?img:container_image list ->
  token Command.t list ->
  path t

Sourceval list : 'a t list -> 'a list t

Source

val independent_workflows_aux : 
  (bool * Any.Set.t) Any.Map.t ->
  Any.Map.key ->
  from:any ->
  (bool * Any.Set.t) Any.Map.t

Sourceval independent_workflows : Any.Map.key -> from:any -> Any.Set.elt list

Sourceval spawn : 'a list t -> f:('a t -> 'b t) -> 'b list t

Sourceval list_nth : 'a list t -> int -> 'a t

Source

val glob : 
  ?pattern:string ->
  ?type_selection:[ `Directory | `File ] ->
  path t ->
  path list t

Sourceval trywith : 'a t -> 'a t -> 'a t

Sourceval ifelse : bool t -> 'a t -> 'a t -> 'a t

Install

Dune Dependency

Authors

Maintainers

Sources

doc/bistro.internals/Bistro_internals/Workflow/index.html

Module `Bistro_internals.Workflow`Source

package bistro

Install

Dune Dependency

Authors

Maintainers

Sources

doc/bistro.internals/Bistro_internals/Workflow/index.html

Module Bistro_internals.WorkflowSource

Module `Bistro_internals.Workflow`Source