package bistro

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in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.engine/Bistro_engine/Execution_env/index.html

Module `Bistro_engine.Execution_env`

type insert =

| Path of Bistro_internals.Workflow.path
| Path_list of {
1. elts : Bistro_internals.Workflow.path list;
2. sep : string;
3. quote : char option;
}
| String of string

type t = {

db : Db.t;
allowed_containers : [ `Docker | `Singularity ] list;
tmp_dir : string;
dest : string;
tmp : string;
stdout : string;
stderr : string;
dep : Bistro_internals.Workflow.path -> string;
file_dump : insert Bistro_internals.Template.t -> string;
np : int;
mem : int;
uid : int;

}

val make : 
  db:Db.t ->
  allowed_containers:[ `Docker | `Singularity ] list ->
  np:int ->
  mem:int ->
  id:string ->
  t

type container_mount = {

mount_host_location : string;
mount_container_location : string;
file_container_location : string;

}

val container_mount : Db.t -> Bistro_internals.Workflow.path -> container_mount

val dockerize : t -> t

val docker_cache_dir : string

val allows_docker : t -> bool

val singularize : t -> t

val choose_container : 
  [ `Docker | `Singularity ] list ->
  Bistro_internals.Command.container_image list ->
  [ `Plain
  | `Docker_container of Bistro_internals.Command.Docker_image.t
  | `Singularity_container of Bistro_internals.Command.container_image ]

val images_for_singularity : 
  [ `Docker | `Singularity ] list ->
  _ Bistro_internals.Command.t ->
  Bistro_internals.Command.container_image list