package bistro

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in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Tophat/index.html

Module `Bistro_bioinfo.Tophat`

class type output = object ... end

val tophat1 : 
  ?color:bool ->
  Bowtie.index Bistro.pworkflow ->
  [ `single_end of fastq Bistro.pworkflow list
  | `paired_end of
    (fastq as 'a) Bistro.pworkflow list * 'a Bistro.pworkflow list ] ->
  output Bistro.pworkflow

val tophat2 : 
  Bowtie2.index Bistro.pworkflow ->
  [ `single_end of fastq Bistro.pworkflow list
  | `paired_end of
    (fastq as 'a) Bistro.pworkflow list * 'a Bistro.pworkflow list ] ->
  output Bistro.pworkflow

val accepted_hits : output Bistro.pworkflow -> bam Bistro.pworkflow

val junctions : output Bistro.pworkflow -> bed6 Bistro.pworkflow