package bistro

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in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Subread/index.html

Module `Bistro_bioinfo.Subread`

http://subread.sourceforge.net/

class type count_table = object ... end

val featureCounts : 
  ?feature_type:string ->
  ?attribute_type:string ->
  ?strandness:[ `Unstranded | `Stranded | `Reversely_stranded ] ->
  ?q:int ->
  ?nthreads:int ->
  gff Bistro.pworkflow ->
  < format : [< `bam | `sam ].. > Bistro.pworkflow ->
  [ `featureCounts ] Bistro.dworkflow

val featureCounts_tsv : 
  [ `featureCounts ] Bistro.dworkflow ->
  count_table Bistro.pworkflow

val featureCounts_htseq_tsv : 
  [ `featureCounts ] Bistro.dworkflow ->
  Htseq.count_tsv Bistro.pworkflow

val featureCounts_summary : 
  [ `featureCounts ] Bistro.dworkflow ->
  Bistro.text_file Bistro.pworkflow