package bistro

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in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Star/index.html

Module `Bistro_bioinfo.Star`

val genomeGenerate : fasta Bistro.pworkflow -> [ `star_index ] Bistro.dworkflow

val alignReads : 
  ?max_mem:[ `GB of int ] ->
  ?outFilterMismatchNmax:int ->
  ?outFilterMultimapNmax:int ->
  ?outSAMstrandField:[ `None | `intronMotif ] ->
  ?alignIntronMax:int ->
  [ `star_index ] Bistro.dworkflow ->
  [ `single_end of sanger_fastq Bistro.pworkflow
  | `paired_end of
    sanger_fastq Bistro.pworkflow * sanger_fastq Bistro.pworkflow ] ->
  bam Bistro.pworkflow