package bistro
A library to build and run distributed scientific workflows
Install
Dune Dependency
Authors
Maintainers
Sources
v0.5.0.tar.gz
md5=0ccb7c97728c94d17494b150192f6162
sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998
doc/bistro.bioinfo/Bistro_bioinfo/Srst2/index.html
Module Bistro_bioinfo.Srst2
val run_gen_cmd :
?mlst_db:fasta Bistro.pworkflow ->
?mlst_delimiter:string ->
?mlst_definitions:fasta Bistro.pworkflow ->
?mlst_max_mismatch:int ->
?gene_db:fasta Bistro.pworkflow list ->
?no_gene_details:bool ->
?gene_max_mismatch:int ->
?min_coverage:int ->
?max_divergence:int ->
?min_depth:int ->
?min_edge_depth:int ->
?prob_err:float ->
?truncation_score_tolerance:int ->
?other:string ->
?max_unaligned_overlap:int ->
?mapq:int ->
?baseq:int ->
?samtools_args:string ->
?report_new_consensus:bool ->
?report_all_consensus:bool ->
string ->
Bistro.Shell_dsl.template list ->
Bistro.Shell_dsl.commandval run_se :
?mlst_db:fasta Bistro.pworkflow ->
?mlst_delimiter:string ->
?mlst_definitions:fasta Bistro.pworkflow ->
?mlst_max_mismatch:int ->
?gene_db:fasta Bistro.pworkflow list ->
?no_gene_details:bool ->
?gene_max_mismatch:int ->
?min_coverage:int ->
?max_divergence:int ->
?min_depth:int ->
?min_edge_depth:int ->
?prob_err:float ->
?truncation_score_tolerance:int ->
?other:string ->
?max_unaligned_overlap:int ->
?mapq:int ->
?baseq:int ->
?samtools_args:string ->
?report_new_consensus:bool ->
?report_all_consensus:bool ->
?threads:int ->
fastq Bistro.pworkflow list ->
Bistro.directory Bistro.pworkflowval run_pe :
?mlst_db:fasta Bistro.pworkflow ->
?mlst_delimiter:string ->
?mlst_definitions:fasta Bistro.pworkflow ->
?mlst_max_mismatch:int ->
?gene_db:fasta Bistro.pworkflow list ->
?no_gene_details:bool ->
?gene_max_mismatch:int ->
?min_coverage:int ->
?max_divergence:int ->
?min_depth:int ->
?min_edge_depth:int ->
?prob_err:float ->
?truncation_score_tolerance:int ->
?other:string ->
?max_unaligned_overlap:int ->
?mapq:int ->
?baseq:int ->
?samtools_args:string ->
?report_new_consensus:bool ->
?report_all_consensus:bool ->
?threads:int ->
fastq Bistro.pworkflow list ->
Bistro.directory Bistro.pworkflow