package bistro

You can search for identifiers within the package.

in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Sra_toolkit/index.html

Module `Bistro_bioinfo.Sra_toolkit`

val img : Bistro.Shell_dsl.container_image list

val fastq_dump : 
  [ `id of string
  | `idw of string Bistro.workflow
  | `file of sra Bistro.pworkflow ] ->
  sanger_fastq Bistro.pworkflow

val fastq_dump_gz : 
  [ `id of string | `file of sra Bistro.pworkflow ] ->
  sanger_fastq Bistro.gz Bistro.pworkflow

val fastq_dump_pe : 
  sra Bistro.pworkflow ->
  sanger_fastq Bistro.pworkflow * sanger_fastq Bistro.pworkflow

val fastq_dump_pe_gz : 
  [ `id of string | `file of sra Bistro.pworkflow ] ->
  sanger_fastq Bistro.gz Bistro.pworkflow
  * sanger_fastq Bistro.gz Bistro.pworkflow

val fastq_dump_to_fasta : sra Bistro.pworkflow -> fasta Bistro.pworkflow