package bistro

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in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Meme_suite/index.html

Module `Bistro_bioinfo.Meme_suite`

val meme : 
  ?nmotifs:int ->
  ?minw:int ->
  ?maxw:int ->
  ?revcomp:bool ->
  ?maxsize:int ->
  ?alphabet:[ `dna | `rna | `protein ] ->
  fasta Bistro.pworkflow ->
  [ `meme ] Bistro.dworkflow

val meme_logo : 
  [ `meme ] Bistro.dworkflow ->
  ?rc:bool ->
  int ->
  Bistro.png Bistro.pworkflow

val meme_chip : 
  ?meme_nmotifs:int ->
  ?meme_minw:int ->
  ?meme_maxw:int ->
  fasta Bistro.pworkflow ->
  [ `meme_chip ] Bistro.dworkflow

val fimo : 
  ?alpha:float ->
  ?bgfile:Bistro.text_file Bistro.pworkflow ->
  ?max_stored_scores:int ->
  ?max_strand:bool ->
  ?motif:string ->
  ?motif_pseudo:float ->
  ?no_qvalue:bool ->
  ?norc:bool ->
  ?parse_genomic_coord:bool ->
  ?prior_dist:Bistro.text_file Bistro.pworkflow ->
  ?psp:Bistro.text_file Bistro.pworkflow ->
  ?qv_thresh:bool ->
  ?thresh:float ->
  [ `meme ] Bistro.dworkflow ->
  fasta Bistro.pworkflow ->
  Bistro.directory Bistro.pworkflow

http://meme-suite.org/doc/fimo.html?man_type=web