package bistro

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in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Macs2/index.html

Module `Bistro_bioinfo.Macs2`

val pileup : 
  ?extsize:int ->
  ?both_direction:bool ->
  bam Bistro.pworkflow ->
  Ucsc_gb.bedGraph Bistro.pworkflow

type gsize = [

| `hs
| `mm
| `ce
| `dm
| `gsize of int

]

type keep_dup = [

| `all
| `auto
| `int of int

]

type _ format

val sam : sam format

val bam : bam format

class type output = object ... end

class type narrow_output = object ... end

class type broad_output = object ... end

val callpeak : 
  ?pvalue:float ->
  ?qvalue:float ->
  ?gsize:gsize ->
  ?call_summits:bool ->
  ?fix_bimodal:bool ->
  ?mfold:(int * int) ->
  ?extsize:int ->
  ?nomodel:bool ->
  ?bdg:bool ->
  ?control:'a Bistro.pworkflow list ->
  ?keep_dup:keep_dup ->
  'a format ->
  'a Bistro.pworkflow list ->
  narrow_output Bistro.pworkflow

class type peaks_xls = object ... end

val peaks_xls : output Bistro.pworkflow -> peaks_xls Bistro.pworkflow

class type narrow_peaks = object ... end

val narrow_peaks : 
  narrow_output Bistro.pworkflow ->
  narrow_peaks Bistro.pworkflow

class type peak_summits = object ... end

val peak_summits : output Bistro.pworkflow -> peak_summits Bistro.pworkflow

val callpeak_broad : 
  ?pvalue:float ->
  ?qvalue:float ->
  ?gsize:gsize ->
  ?call_summits:bool ->
  ?fix_bimodal:bool ->
  ?mfold:(int * int) ->
  ?extsize:int ->
  ?nomodel:bool ->
  ?bdg:bool ->
  ?control:'a Bistro.pworkflow list ->
  ?keep_dup:keep_dup ->
  'a format ->
  'a Bistro.pworkflow list ->
  broad_output Bistro.pworkflow

class type broad_peaks = object ... end

val broad_peaks : broad_output Bistro.pworkflow -> broad_peaks Bistro.pworkflow