package bistro

You can search for identifiers within the package.

in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Idr/index.html

Module `Bistro_bioinfo.Idr`

type 'a format

val narrowPeak : Macs2.narrow_peaks format

val broadPeak : Macs2.broad_peaks format

val bed : bed3 format

val gff : gff format

type 'a output = [

| `idr_output of 'a

]

val idr : 
  input_file_type:'a format ->
  ?idr_threshold:float ->
  ?soft_idr_threshold:float ->
  ?peak_merge_method:[ `sum | `avg | `min | `max ] ->
  ?rank:[ `signal | `pvalue | `qvalue ] ->
  ?random_seed:int ->
  ?peak_list:'a Bistro.pworkflow ->
  'a Bistro.pworkflow ->
  'a Bistro.pworkflow ->
  'a output Bistro.dworkflow

val items : 'a output Bistro.dworkflow -> 'a Bistro.pworkflow

val figure : _ output Bistro.dworkflow -> Bistro.png Bistro.pworkflow