package bistro

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in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Hisat2/index.html

Module `Bistro_bioinfo.Hisat2`

val img : Bistro.Shell_dsl.container_image list

val hisat2_build : 
  ?large_index:bool ->
  ?noauto:bool ->
  ?packed:bool ->
  ?bmax:int ->
  ?bmaxdivn:int ->
  ?dcv:int ->
  ?nodc:bool ->
  ?noref:bool ->
  ?justref:bool ->
  ?offrate:int ->
  ?ftabchars:int ->
  ?seed:int ->
  ?cutoff:int ->
  fasta Bistro.pworkflow ->
  [ `hisat2_index ] Bistro.dworkflow

val hisat2 : 
  ?skip:int ->
  ?qupto:int ->
  ?trim5:int ->
  ?trim3:int ->
  ?fastq_format:'a Fastq.format ->
  ?k:int ->
  ?minins:int ->
  ?maxins:int ->
  ?orientation:[ `fr | `ff | `rf ] ->
  ?no_mixed:bool ->
  ?no_discordant:bool ->
  ?seed:int ->
  [ `hisat2_index ] Bistro.dworkflow ->
  [ `single_end of sanger_fastq Bistro.pworkflow list
  | `paired_end of
    sanger_fastq Bistro.pworkflow list * sanger_fastq Bistro.pworkflow list ] ->
  sam Bistro.pworkflow