package bistro

You can search for identifiers within the package.

in-package search v0.2.0

A library to build and run distributed scientific workflows

Install

Dune Dependency

github.com Readme Edit opam file Versions (2)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

v0.5.0.tar.gz

md5=0ccb7c97728c94d17494b150192f6162

sha512=61dbd0ee5b98cd5fb8871d653aef0e440c318e9fbca439c3b0e4f86a32fa03c2a8a4770cd96b929b21b378db6788fa7d4df15935370be5b7b227564a31994998

doc/bistro.bioinfo/Bistro_bioinfo/Fastq_screen/index.html

Module `Bistro_bioinfo.Fastq_screen`

class type output = object ... end

val fastq_screen : 
  ?bowtie2_opts:string ->
  ?filter:
    [ `Not_map
    | `Uniquely
    | `Multi_maps
    | `Maps
    | `Not_map_or_Uniquely
    | `Not_map_or_Multi_maps
    | `Ignore ]
      list ->
  ?illumina:bool ->
  ?nohits:bool ->
  ?pass:int ->
  ?subset:int ->
  ?tag:bool ->
  ?threads:int ->
  ?top:[ `top1 of int | `top2 of int * int ] ->
  ?lightweight:bool ->
  fastq Bistro.pworkflow ->
  (string * fasta Bistro.pworkflow) list ->
  output Bistro.pworkflow

val html_report : output Bistro.pworkflow -> Bistro.html Bistro.pworkflow