package bistro-bio

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in-package search v0.2.0

Bistro workflows for computational biology

Install

Dune Dependency

github.com Readme Edit opam file Versions (1)

Authors

P

Philippe Veber

Maintainers

P

philippe.veber@gmail.com

Sources

bistro-0.6.0.tbz

sha256=146177faaaa9117a8e2bf0fd60cb658662c0aa992f35beb246e6fd0766050e66

sha512=553fe0c20f236316449b077a47e6e12626d193ba1916e9da233e5526dd39090e8677277e1c79baace3bdc940cb009f25431730a8efc00ae4ed9cc42a0add9609

doc/bistro-bio.examples/Bistro_bio_examples/Chen2008/Sample/index.html

Module `Chen2008.Sample`Source

Sourcetype t = [

| `ES_WT_ChIP_Nanog_Chen2008
| `ES_WT_ChIP_Pou5f1_Chen2008
| `ES_WT_ChIP_Sox2_Chen2008
| `ES_WT_ChIP_Essrb_Chen2008

]

Source

val pp : 
  Ppx_deriving_runtime.Format.formatter ->
  t ->
  Ppx_deriving_runtime.unit

Sourceval show : t -> Ppx_deriving_runtime.string

Sourceval all : t list

Source

val srr_id : 
  [< `ES_WT_ChIP_Essrb_Chen2008
  | `ES_WT_ChIP_Nanog_Chen2008
  | `ES_WT_ChIP_Pou5f1_Chen2008
  | `ES_WT_ChIP_Sox2_Chen2008 ] ->
  string Biotk.List1.t

Source

val source : 
  [< `ES_WT_ChIP_Essrb_Chen2008
  | `ES_WT_ChIP_Nanog_Chen2008
  | `ES_WT_ChIP_Pou5f1_Chen2008
  | `ES_WT_ChIP_Sox2_Chen2008 ] ->
  Bistro_bio.Fastq_sample.source Biotk.List1.t

Source

val string_of_sample : 
  [< `ES_WT_ChIP_Essrb_Chen2008
  | `ES_WT_ChIP_Nanog_Chen2008
  | `ES_WT_ChIP_Pou5f1_Chen2008
  | `ES_WT_ChIP_Sox2_Chen2008 ] ->
  string

Sourceval base_url : string

Source

val published_peaks_url_suffix : 
  [< `ES_WT_ChIP_Essrb_Chen2008
  | `ES_WT_ChIP_Nanog_Chen2008
  | `ES_WT_ChIP_Pou5f1_Chen2008
  | `ES_WT_ChIP_Sox2_Chen2008 ] ->
  string

Source

val published_peaks : 
  [< `ES_WT_ChIP_Essrb_Chen2008
  | `ES_WT_ChIP_Nanog_Chen2008
  | `ES_WT_ChIP_Pou5f1_Chen2008
  | `ES_WT_ChIP_Sox2_Chen2008 ] ->
  Bistro.text Bistro.file

Sourceval to_string : t -> Ppx_deriving_runtime.string

Source

val reference_genome : 
  'a ->
  Bistro_bio.Dnaseq_with_reference_genome.reference_genome

package bistro-bio

Install

Dune Dependency

Authors

Maintainers

Sources

doc/bistro-bio.examples/Bistro_bio_examples/Chen2008/Sample/index.html

Module Chen2008.SampleSource

Module `Chen2008.Sample`Source