package biocaml

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The OCaml Bioinformatics Library

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Dune Dependency

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biocaml-0.11.2.tbz
sha256=fae219e66db06f81f3fd7d9e44717ccf2d6d85701adb12004ab4ae6d3359dd2d
sha512=f6abd60dac2e02777be81ce3b5acdc0db23b3fa06731f5b2d0b32e6ecc9305fe64f407bbd95a3a9488b14d0a7ac7c41c73a7e18c329a8f18febfc8fd50eccbc6

doc/biocaml.unix/Biocaml_unix/Jaspar/index.html

Module Biocaml_unix.JasparSource

Access to Jaspar database

Sourcetype collection =
  1. | Core
  2. | Phylofacts
  3. | CNE
  4. | PBM
  5. | PBM_HOMEO
  6. | PBM_HLH
  7. | FAM
  8. | SPLICE
  9. | POLII

The possible kinds of motifs.

Sourcetype motif = private {
  1. id : string;
  2. jaspar_id : string;
  3. collection : collection;
  4. factor_name : string;
  5. factor_class : string;
  6. family : string option;
  7. comment : string option;
  8. medline : string;
  9. matrix : int array array;
}

A Jaspar motif

Sourceval load : string -> motif list

Loads a database in SQL dump format, as available at Jaspar website

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