package biocaml
The OCaml Bioinformatics Library
Install
Dune Dependency
Authors
Maintainers
Sources
v0.11.1.tar.gz
md5=e292efa2f61fec33dad63ec897106f59
sha512=35519bf3b1e67a9191ef9bb74eba0dae941e0d05bad89076a36f507dc5c2d105a03c1c917d5a3f7ed9d1da4acbf3199582f78c308aa2a5a22c21f743945c852b
doc/src/biocaml.lwt/future_lwt.ml.html
Source file future_lwt.ml
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type how = [ `Parallel | `Sequential | `Max_concurrent_jobs of int ] module Deferred = struct type 'a t = 'a Lwt.t include Monad.Make(struct type 'a t = 'a Lwt.t let return = Lwt.return let bind x ~f = Lwt.bind x f let map = `Custom (fun m ~f -> Lwt.map f m) end) let unit = Lwt.return_unit module Result = struct type ('a, 'b) t = ('a, 'b) Result.t Lwt.t include Monad.Make2(struct type ('a, 'b) t = ('a, 'b) Result.t Lwt.t let return x = Lwt.return (Ok x) let bind m ~f = Lwt.bind m (function | Ok x -> f x | Error _ as x -> Lwt.return x ) let map = `Custom (fun m ~f -> Lwt.map (function | Ok x -> Ok (f x) | Error _ as x -> x ) m) end) end module List = struct let fold l ~init ~f = Lwt_list.fold_left_s f init l let iter ?(how = `Sequential) l ~f = match how with | `Sequential -> Lwt_list.iter_s f l | `Max_concurrent_jobs _ | `Parallel -> Lwt_list.iter_p f l let map ?(how = `Sequential) l ~f = match how with | `Sequential -> Lwt_list.map_s f l | `Max_concurrent_jobs _ | `Parallel -> Lwt_list.map_p f l let filter ?(how = `Sequential) l ~f = match how with | `Sequential -> Lwt_list.filter_s f l | `Max_concurrent_jobs _ | `Parallel -> Lwt_list.filter_p f l end module Or_error = struct module List = struct let map ?(how = `Sequential) l ~f = let map = match how with | `Sequential -> Lwt_list.map_s | `Max_concurrent_jobs _ | `Parallel -> Lwt_list.map_p in let module M = struct exception E of Error.t let helper () = map (fun x -> f x >>| function | Ok x -> x | Error e -> raise (E e) ) l end in try (M.helper() >>| fun x -> Ok x) with M.E e -> return (Error e) let iter ?(how = `Sequential) l ~f = let iter = match how with | `Sequential -> Lwt_list.iter_s | `Max_concurrent_jobs _ | `Parallel -> Lwt_list.iter_p in let module M = struct exception E of Error.t let helper () = iter (fun x -> f x >>| function | Ok () -> () | Error e -> raise (E e) ) l end in try (M.helper() >>| fun () -> Ok ()) with M.E e -> return (Error e) end end end let return = Deferred.return let (>>=) = Deferred.(>>=) let (>>|) = Deferred.(>>|) let (>>=?) = Deferred.Result.(>>=) let (>>|?) = Deferred.Result.(>>|) let fail = Lwt.fail let raise = `Use_fail_instead let try_with f = Lwt.catch (fun () -> f () >>| fun x -> Ok x) (fun exn -> return (Error exn)) module In_thread = struct let run f = Lwt_preemptive.detach f () end module Pipe = struct module Reader = struct type 'a t = 'a Lwt_stream.t end let read r = Lwt_stream.get r >>| function | Some x -> `Ok x | None -> `Eof let junk = Lwt_stream.junk let peek_deferred r = Lwt_stream.peek r >>| function | Some x -> `Ok x | None -> `Eof let map r ~f = Lwt_stream.map f r let fold r ~init ~f = Lwt_stream.fold_s (fun a accum -> f accum a) r init let iter r ~f = Lwt_stream.iter_s f r end module Reader = struct module Read_result = struct type 'a t = [ `Eof | `Ok of 'a ] end type t = Lwt_io.input_channel let open_file ?buf_len file = let buffer = Option.map buf_len ~f:Lwt_bytes.create in Lwt_io.open_file ?buffer ~mode:Lwt_io.input file let close = Lwt_io.close let with_file ?buf_len file ~f = let buffer = Option.map buf_len ~f:Lwt_bytes.create in Lwt_io.with_file ?buffer ~mode:Lwt_io.input file f let read_line ic = Lwt_io.read_line_opt ic >>| function | Some x -> `Ok x | None -> `Eof let read_all ic read_one = Lwt_stream.from (fun () -> read_one ic >>= function | `Ok x -> Lwt.return (Some x) | `Eof -> Lwt_io.close ic >>= fun () -> Lwt.return None ) let lines ic = read_all ic read_line let contents ic = Lwt_io.read ic >>= fun ans -> Lwt_io.close ic >>= fun () -> return ans let file_contents file = with_file file ~f:Lwt_io.read let file_lines file = Lwt_io.lines_of_file file |> Lwt_stream.to_list end module Writer = struct type t = Lwt_io.output_channel let with_file ?perm ?(append=false) file ~f = let flags = match append with | true -> Caml_unix.([O_WRONLY; O_CREAT; O_APPEND]) | false -> Caml_unix.([O_WRONLY; O_CREAT; O_TRUNC]) in Lwt_io.with_file ~flags ?perm ~mode:Lwt_io.output file f let write = Lwt_io.write let write_char = Lwt_io.write_char let write_line = Lwt_io.write_line end (* module Sys = struct *) (* include Sys *) (* let file_exists x = Lwt_preemptive.detach file_exists x *) (* let is_file ?follow_symlinks x = *) (* Lwt_preemptive.detach (is_file ?follow_symlinks) x *) (* let is_directory ?follow_symlinks x = *) (* Lwt_preemptive.detach (is_directory ?follow_symlinks) x *) (* end *) (* module Unix = struct *) (* type file_perm = Caml_unix.file_perm *) (* Lwt doesn't provide a non-blocking version of getcwd because presumably it is doesn't block. However, Async does because it claims it could block. See https://sympa.inria.fr/sympa/arc/ocsigen/2013-09/msg00003.html. If we agreed it is non-blocking, then could implement as: let getcwd () = return (Unix.getcwd()) However, I think Async is right, so I wrap it in Lwt's detach. *) (* let getcwd () = Lwt_preemptive.detach Caml_unix.getcwd () *) (* let rename ~src ~dst = Lwt_unix.rename src dst *) (* let getpid = Unix.getpid *) (* module Stats = struct *) (* type t = Unix.stats = { *) (* st_dev : int; *) (* st_ino : int; *) (* st_kind : Unix.file_kind; *) (* st_perm : file_perm; *) (* st_nlink : int; *) (* st_uid : int; *) (* st_gid : int; *) (* st_rdev : int; *) (* st_size : int64; *) (* st_atime : float; *) (* st_mtime : float; *) (* st_ctime : float; *) (* } *) (* end *) (* (\** We don't call Lwt_unix's [stat] and [lstat] because they don't *) (* support large file sizes. *\) *) (* let stat x = Lwt_preemptive.detach Unix.stat x *) (* let lstat x = Lwt_preemptive.detach Unix.lstat x *) (* end *)
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