package biocaml

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The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.11.0.tar.gz

md5=486aeb3e552dabae85839e2af30d6c52

sha512=4ed2df0b7cbd80bd6e29bd8fee9d2dacd9379ad0f4ff142bd8e16ade3f1507f6cc7cbe4c614943b8feb8fa4705935695cb458606b0da813dbf255b1e566a43cf

doc/biocaml.ez/Biocaml_ez/Fastq/index.html

Module `Biocaml_ez.Fastq`Source

Sourcetype nonrec item = Biocaml_unix.Fastq.item

Sourceval split_name : string -> string * string option

Source

val read : 
  Biocaml_unix.Future_unix.Reader.t ->
  Biocaml_unix.Fastq.item CFStream.Stream.t

Source

val write : 
  Biocaml_unix.Future_unix.Writer.t ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Source

val write_file : 
  ?perm:int ->
  ?append:bool ->
  string ->
  Biocaml_unix.Fastq.item Biocaml_unix.Future_unix.Pipe.Reader.t ->
  unit Biocaml_unix.Future_unix.Deferred.t

Sourcemodule Illumina : sig ... end

Sourceval item_to_string : Biocaml_unix.Fastq.item -> string

Sourceval name_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval sequence_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Sourceval comment_of_line : ?pos:Biocaml_unix.Pos.t -> Biocaml_unix.Line.t -> string

Source

val qualities_of_line : 
  ?pos:Biocaml_unix.Pos.t ->
  ?sequence:string ->
  Biocaml_unix.Line.t ->
  string

package biocaml

Install

Dune Dependency

Authors

Maintainers

Sources

doc/biocaml.ez/Biocaml_ez/Fastq/index.html

Module Biocaml_ez.FastqSource

Module `Biocaml_ez.Fastq`Source