package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

md5=4cf944bcae5d36bf47b67f6bcb2455d7

sha512=0262b5768aefd7c080f664c46c88876fce9a658cc6a87358a77b7112c49ae3042e7ab542e76be5738fbaeda853149b308b48d4897960b5c7ae3b4da71d978bd8

Sequence Graph (SGR) files.

type t

exception Bad of string

val of_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  Core_kernel.In_channel.t ->
  t

val of_file : ?chr_map:(string -> string) -> ?increment_bp:int -> string -> t

val of_list : (string * int * float) list -> t

val of_chr_lists : (string * (int * float) list) list -> t

val to_channel : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  Core_kernel.Out_channel.t ->
  unit

val to_file : 
  ?chr_map:(string -> string) ->
  ?increment_bp:int ->
  t ->
  string ->
  unit

Items will be printed in ascending order by (chr,coord).

val to_list : t -> (string * int * float) list

Items will be returned in ascending order by (chr,coord).

val to_chr_lists : t -> (string * (int * float) list) list

Outer list will be in ascending order by chr, and inner lists will be in ascending order by coord.