package biocaml

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The OCaml Bioinformatics Library

Install

md5=4cf944bcae5d36bf47b67f6bcb2455d7

sha512=0262b5768aefd7c080f664c46c88876fce9a658cc6a87358a77b7112c49ae3042e7ab542e76be5738fbaeda853149b308b48d4897960b5c7ae3b4da71d978bd8

Read mzData files (mass spectrometry data format).

type vec =
  (float, Bigarray.float64_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of 64 bits floats.

type int_vec =
  (int, Bigarray.int_elt, Bigarray.fortran_layout) Bigarray.Array1.t

Vectors of OCaml ints.

module Precursor : sig ... end

type spectrum = {

id : int;
(*
index of the spectrum in the file (starting with 1).
*)
mslevel : int;
(*
1: MS, 2: MS/MS,...
*)
precursor : Precursor.t list;
(*
List of precursors to the spectrum currently being described.
*)
mz : vec;
(*
m/z
*)
int : vec;
(*
intensities
*)
sup : (string * vec) list;
(*
Supplemental (name, arrays), if any
*)

}

Individual mass spectrum.

val of_file : string -> spectrum list

of_file fname returns the spectra contained in the file fname.