package biocaml

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The OCaml Bioinformatics Library

Install

md5=4cf944bcae5d36bf47b67f6bcb2455d7

sha512=0262b5768aefd7c080f664c46c88876fce9a658cc6a87358a77b7112c49ae3042e7ab542e76be5738fbaeda853149b308b48d4897960b5c7ae3b4da71d978bd8

A collection of non-overlapping regions (e.g. a set of CpG islands)

type t

val empty : t

val add : t -> location -> t

val inter : t -> t -> t

val union : t -> t -> t

val diff : t -> t -> t

val size : t -> int

val intersects : t -> location -> bool

intersects loc sel returns true if loc has a non-empty intersection with sel, and false otherwise.

val overlap : t -> location -> int

val to_stream : t -> location Stream.t

val of_stream : location Stream.t -> t

of_stream e computes a selection (i.e. a set of non overlapping locations) as the union of the locations contained in e