package biocaml

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in-package search v0.2.0

The OCaml Bioinformatics Library

Install

Dune Dependency

biocaml.org Readme Edit opam file Versions (5)

Authors

Maintainers

B

biocaml@googlegroups.com

Sources

v0.10.1.tar.gz

md5=4cf944bcae5d36bf47b67f6bcb2455d7

sha512=0262b5768aefd7c080f664c46c88876fce9a658cc6a87358a77b7112c49ae3042e7ab542e76be5738fbaeda853149b308b48d4897960b5c7ae3b4da71d978bd8

doc/biocaml.base/Biocaml_base/Ucsc_genome_browser/index.html

Module `Biocaml_base.Ucsc_genome_browser`

type assembly = [

| `dm3
| `droSim1
| `hg18
| `hg19
| `hg38
| `mm8
| `mm9
| `mm10
| `sacCer2

]

val string_of_assembly : [< assembly ] -> Base.string

type track_attribute = [

| `name of Base.string
| `description of Base.string
| `type_ of track_type
| `visibility of [ `hide | `full | `dense | `pack | `squish ]
| `color of color
| `itemRgb of Base.bool
| `colorByStrand of color * color
| `useScore of Base.bool
| `group of Base.string
| `priority of Base.int
| `db of assembly
| `offset of Base.int
| `maxItems of Base.int
| `url of Base.string
| `htmlUrl of Base.string
| `bigDataUrl of Base.string

]

and color = Base.int * Base.int * Base.int

and track_type = [

| `bam
| `bedDetail
| `bedGraph
| `bigBed
| `bigWig
| `broadPeak
| `narrowPeak
| `array
| `vcf
| `wig

]

val track_line : track_attribute Base.list -> Base.string

type url_param = [

| `pix of Base.int
| `hgt_labelWidth of Base.int
| `textSize of Base.int

]

val custom_track_url : 
  ?params:url_param Base.list ->
  db:[< assembly ] ->
  position:(Base.string * (Base.int * Base.int) Base.option) ->
  data_url:Base.string ->
  Base.unit ->
  Base.string

val bigData_custom_track_url : 
  ?params:url_param Base.list ->
  db:[< assembly ] ->
  position:(Base.string * (Base.int * Base.int) Base.option) ->
  track:track_attribute Base.list ->
  Base.unit ->
  Base.string